A C D E F G H I M N O P R S T U

A

addAlternativesFrom(Chunk) - Method in class org.processmining.uncertaintymarker.models.Chunk

Copies alternatives from one chunk and adds it to another.

addingOccurrenceNumbers(XLog) - Method in class org.processmining.uncertaintymarker.algorithms.Consolidation

Adds an occurrence number to each event, which is telling how often this event label occured in the enclosing trace already.

addItem(XAttributeMapImpl) - Method in class org.processmining.uncertaintymarker.models.Chunk

Adds all probability information from a row into a chunk.

addItem(XAttributeMapImpl, int) - Method in class org.processmining.uncertaintymarker.models.TransitionData

Adds a event from a column of a certain trace in the aligned log to this object.

alignAlignments(Alignment, Alignment) - Method in class org.processmining.uncertaintymarker.algorithms.TraceAlignment

Aligns two alignments by adding gap-signs to their traces.

AlignedStepDiscovery - Class in org.processmining.uncertaintymarker.algorithms

The process discovery step is the third out of four steps performed by this plugin.

AlignedStepDiscovery() - Constructor for class org.processmining.uncertaintymarker.algorithms.AlignedStepDiscovery

Alignment - Class in org.processmining.uncertaintymarker.models

A data structure object that is used to store information for the process of TraceAlignment.

Alignment(String, String, String, ArrayList<XTrace>) - Constructor for class org.processmining.uncertaintymarker.models.Alignment

Alternative - Class in org.processmining.uncertaintymarker.models

An Alternative stores information about the confidence of a certain prediction class.

Alternative(String, ArrayList<Double>) - Constructor for class org.processmining.uncertaintymarker.models.Alternative

apply(PluginContext, XLog, Parameters) - Method in class org.processmining.uncertaintymarker.algorithms.MainAlgorithm

Implements the main method of the plugin, controls the flow of the whole mining process by starting the different steps (in dependency from the parameters).

asdSlider - Static variable in class org.processmining.uncertaintymarker.dialogs.UserInput

attachInformation(Petrinet, PluginContext, XLog, Parameters) - Method in class org.processmining.uncertaintymarker.algorithms.NetAttachment

C

Chunk - Class in org.processmining.uncertaintymarker.models

A Chunk is used in the Consolidation to aggregate the confidences of time windows within a log trace which belong together.

Chunk() - Constructor for class org.processmining.uncertaintymarker.models.Chunk

Chunk(String, ArrayList<Alternative>) - Constructor for class org.processmining.uncertaintymarker.models.Chunk

Chunk(String) - Constructor for class org.processmining.uncertaintymarker.models.Chunk

compareTo(Alternative) - Method in class org.processmining.uncertaintymarker.models.Alternative

computeAvg(int) - Method in class org.processmining.uncertaintymarker.models.Alternative

Computes average probability of the alternative, rounds it to 3 digits and stores it in the avg attribute.

computeAvg() - Method in class org.processmining.uncertaintymarker.models.Chunk

Computes average probability of most probable event Chunk.

computeAvg() - Method in class org.processmining.uncertaintymarker.models.TransitionData

Computes average probability of most probable event alternative.

Connection - Class in org.processmining.uncertaintymarker.connections

Connection(XLog, Petrinet, Petrinet, XLog, XLog, Parameters) - Constructor for class org.processmining.uncertaintymarker.connections.Connection

Create a connection.

Consolidation - Class in org.processmining.uncertaintymarker.algorithms

The consolidation step is the first out of four steps performed by this plugin.

Consolidation() - Constructor for class org.processmining.uncertaintymarker.algorithms.Consolidation

D

DescriptionText - Class in org.processmining.uncertaintymarker.help

Short description shown in the plugins overview list of ProM.

DescriptionText() - Constructor for class org.processmining.uncertaintymarker.help.DescriptionText

discoverPetrinet(XLog, double, PluginContext) - Method in class org.processmining.uncertaintymarker.algorithms.AlignedStepDiscovery

Main method of this class.

E

equals(Object) - Method in class org.processmining.uncertaintymarker.models.Alternative

equals(Object) - Method in class org.processmining.uncertaintymarker.models.TransitionData

equals(Object) - Method in class org.processmining.uncertaintymarker.parameters.Parameters

Explanation - Class in org.processmining.uncertaintymarker.dialogs

Explanation() - Constructor for class org.processmining.uncertaintymarker.dialogs.Explanation

F

findBestAlignsAtCurrentLevel(ArrayList<Alignment>, ArrayList<Integer>, ArrayList<Alignment>, int) - Method in class org.processmining.uncertaintymarker.algorithms.TraceAlignment

Select a subset from all potential alignments in the input allAlignmentsAtLvl by considering their evaluation score results.

findMaxima(XAttributeMap) - Method in class org.processmining.uncertaintymarker.algorithms.Consolidation

Finds the two best maxima in the attribute map from the input and returns a list containing XAttributes of it.

FIRSTINPUT - Static variable in class org.processmining.uncertaintymarker.connections.Connection

Label for first input.

G

getAlgorithm() - Method in class org.processmining.uncertaintymarker.parameters.Parameters

getAlignedTraces() - Method in class org.processmining.uncertaintymarker.models.Alignment

getAllAlternatives() - Method in class org.processmining.uncertaintymarker.models.Chunk

getAllAlternatives() - Method in class org.processmining.uncertaintymarker.models.TransitionData

getAsdInclusionThreshold() - Method in class org.processmining.uncertaintymarker.parameters.Parameters

getAvg() - Method in class org.processmining.uncertaintymarker.models.Alternative

getAvg() - Method in class org.processmining.uncertaintymarker.models.Chunk

getAvg() - Method in class org.processmining.uncertaintymarker.models.TransitionData

getChunkMinimum() - Method in class org.processmining.uncertaintymarker.parameters.Parameters

getDifferenceThreshold() - Method in class org.processmining.uncertaintymarker.parameters.Parameters

getEvalScore1() - Method in class org.processmining.uncertaintymarker.parameters.Parameters

getEvalScore2() - Method in class org.processmining.uncertaintymarker.parameters.Parameters

getEvalScore3() - Method in class org.processmining.uncertaintymarker.parameters.Parameters

getEvalScore4() - Method in class org.processmining.uncertaintymarker.parameters.Parameters

getEvaluation() - Method in class org.processmining.uncertaintymarker.models.Alignment

getFrequency() - Method in class org.processmining.uncertaintymarker.models.TransitionData

getIndelScore() - Method in class org.processmining.uncertaintymarker.parameters.Parameters

getLabel() - Method in class org.processmining.uncertaintymarker.models.Alternative

getLabel() - Method in class org.processmining.uncertaintymarker.models.Chunk

getLabel() - Method in class org.processmining.uncertaintymarker.models.TransitionData

getList() - Method in class org.processmining.uncertaintymarker.models.Alternative

getName() - Method in class org.processmining.uncertaintymarker.models.Alignment

getParameters() - Method in class org.processmining.uncertaintymarker.connections.Connection

getPredecessor_1() - Method in class org.processmining.uncertaintymarker.models.Alignment

getPredecessor_2() - Method in class org.processmining.uncertaintymarker.models.Alignment

getPruningAlgorithm() - Method in class org.processmining.uncertaintymarker.parameters.Parameters

getRowsInChunk() - Method in class org.processmining.uncertaintymarker.models.Chunk

getSubScore1() - Method in class org.processmining.uncertaintymarker.parameters.Parameters

getSubScore2() - Method in class org.processmining.uncertaintymarker.parameters.Parameters

getSubScore3() - Method in class org.processmining.uncertaintymarker.parameters.Parameters

H

hashCode() - Method in class org.processmining.uncertaintymarker.models.Alternative

hashCode() - Method in class org.processmining.uncertaintymarker.models.TransitionData

HmmPruning - Class in org.processmining.uncertaintymarker.algorithms

HmmPruning(SuccessorMatrix, XLog) - Constructor for class org.processmining.uncertaintymarker.algorithms.HmmPruning

I

isChunkingActive() - Method in class org.processmining.uncertaintymarker.parameters.Parameters

isEnhancementActive() - Method in class org.processmining.uncertaintymarker.parameters.Parameters

M

MainAlgorithm - Class in org.processmining.uncertaintymarker.algorithms

Main Class of this plugins internal application logic.

MainAlgorithm() - Constructor for class org.processmining.uncertaintymarker.algorithms.MainAlgorithm

moreThenOneMax() - Method in class org.processmining.uncertaintymarker.models.Chunk

Returns true if more than one max in current row, else returns false.

N

NetAttachment - Class in org.processmining.uncertaintymarker.algorithms

This class implements the fourth and last step of the plugin.

NetAttachment() - Constructor for class org.processmining.uncertaintymarker.algorithms.NetAttachment

O

org.processmining.uncertaintymarker.algorithms - package org.processmining.uncertaintymarker.algorithms

org.processmining.uncertaintymarker.connections - package org.processmining.uncertaintymarker.connections

org.processmining.uncertaintymarker.dialogs - package org.processmining.uncertaintymarker.dialogs

org.processmining.uncertaintymarker.help - package org.processmining.uncertaintymarker.help

org.processmining.uncertaintymarker.models - package org.processmining.uncertaintymarker.models

org.processmining.uncertaintymarker.parameters - package org.processmining.uncertaintymarker.parameters

org.processmining.uncertaintymarker.plugins - package org.processmining.uncertaintymarker.plugins

OUTPUT1 - Variable in class org.processmining.uncertaintymarker.connections.Connection

Label for output.

OUTPUT2 - Variable in class org.processmining.uncertaintymarker.connections.Connection

OUTPUT3 - Variable in class org.processmining.uncertaintymarker.connections.Connection

OUTPUT4 - Variable in class org.processmining.uncertaintymarker.connections.Connection

outputLog - Variable in class org.processmining.uncertaintymarker.algorithms.HmmPruning

P

pairWiseTraceAlignment(XTrace, XTrace) - Method in class org.processmining.uncertaintymarker.algorithms.TraceAlignment

Aligns two traces by adding gap-signs to them.

Parameters - Class in org.processmining.uncertaintymarker.parameters

Parameters(XLog) - Constructor for class org.processmining.uncertaintymarker.parameters.Parameters

Parameters(Parameters) - Constructor for class org.processmining.uncertaintymarker.parameters.Parameters

preprocess(XLog, Parameters) - Method in class org.processmining.uncertaintymarker.algorithms.Consolidation

The main method of the consolidation class,invokes all submethods.

pruningDropdown - Static variable in class org.processmining.uncertaintymarker.dialogs.UserInput

R

recursiveTA(ArrayList<Alignment>, int) - Method in class org.processmining.uncertaintymarker.algorithms.TraceAlignment

The recursive main method of this class, which controls the different substeps by invocation of the submethods.

removeOccurenceNumbers(XLog, Petrinet) - Static method in class org.processmining.uncertaintymarker.algorithms.NetAttachment

Removes occurrence numbers from transition labels and from event labels in the log, since they are not needed anymore after the trace alignment step, and would make the id-mapping more complex.

round(double, int) - Static method in class org.processmining.uncertaintymarker.help.Utilities

Returns the input value rounded by n places

runUI(UIPluginContext, XLog) - Method in class org.processmining.uncertaintymarker.plugins.UncertaintyMarker

The plug-in variant that runs in a UI context and uses a dialog to get the parameters.

S

Scoringtable - Class in org.processmining.uncertaintymarker.models

This class wraps a scoring table.

Scoringtable(int, int) - Constructor for class org.processmining.uncertaintymarker.models.Scoringtable

scoringTable - Variable in class org.processmining.uncertaintymarker.models.Scoringtable

setAlgorithm(String) - Method in class org.processmining.uncertaintymarker.parameters.Parameters

setAlignedTraces(ArrayList<XTrace>) - Method in class org.processmining.uncertaintymarker.models.Alignment

setAllAlternatives(ArrayList<Alternative>) - Method in class org.processmining.uncertaintymarker.models.TransitionData

setAsdInclusionThreshold(double) - Method in class org.processmining.uncertaintymarker.parameters.Parameters

setAvg(double) - Method in class org.processmining.uncertaintymarker.models.Alternative

setAvg(double) - Method in class org.processmining.uncertaintymarker.models.Chunk

setAvg(double) - Method in class org.processmining.uncertaintymarker.models.TransitionData

setChunkingActive(boolean) - Method in class org.processmining.uncertaintymarker.parameters.Parameters

setChunkMinimum(Integer) - Method in class org.processmining.uncertaintymarker.parameters.Parameters

setChunkMinimum(int) - Method in class org.processmining.uncertaintymarker.parameters.Parameters

setColumnDistribution(int) - Method in class org.processmining.uncertaintymarker.algorithms.AlignedStepDiscovery

Aggregate/Summarize all events contained in the specified column into objects of type TransitionData and store them in the transitions list.

setDifferenceThreshold(double) - Method in class org.processmining.uncertaintymarker.parameters.Parameters

setEnhancementActive(boolean) - Method in class org.processmining.uncertaintymarker.parameters.Parameters

setEvalScore1(int) - Method in class org.processmining.uncertaintymarker.parameters.Parameters

setEvalScore2(int) - Method in class org.processmining.uncertaintymarker.parameters.Parameters

setEvalScore3(int) - Method in class org.processmining.uncertaintymarker.parameters.Parameters

setEvalScore4(int) - Method in class org.processmining.uncertaintymarker.parameters.Parameters

setEvaluation(int) - Method in class org.processmining.uncertaintymarker.models.Alignment

setFrequency(int) - Method in class org.processmining.uncertaintymarker.models.TransitionData

setIndelScore(int) - Method in class org.processmining.uncertaintymarker.parameters.Parameters

setLabel(String) - Method in class org.processmining.uncertaintymarker.models.Alternative

setLabel(String) - Method in class org.processmining.uncertaintymarker.models.Chunk

setLabel(String) - Method in class org.processmining.uncertaintymarker.models.TransitionData

setList(ArrayList<Double>) - Method in class org.processmining.uncertaintymarker.models.Alternative

setName(String) - Method in class org.processmining.uncertaintymarker.models.Alignment

setPredecessor_1(String) - Method in class org.processmining.uncertaintymarker.models.Alignment

setPredecessor_2(String) - Method in class org.processmining.uncertaintymarker.models.Alignment

setPruningAlgorithm(String) - Method in class org.processmining.uncertaintymarker.parameters.Parameters

setRowsInChunk(int) - Method in class org.processmining.uncertaintymarker.models.Chunk

setSubScore1(int) - Method in class org.processmining.uncertaintymarker.parameters.Parameters

setSubScore2(int) - Method in class org.processmining.uncertaintymarker.parameters.Parameters

setSubScore3(int) - Method in class org.processmining.uncertaintymarker.parameters.Parameters

SuccessorMatrix - Class in org.processmining.uncertaintymarker.models

SuccessorMatrix(XLog) - Constructor for class org.processmining.uncertaintymarker.models.SuccessorMatrix

successorTable - Variable in class org.processmining.uncertaintymarker.models.SuccessorMatrix

T

TEXT - Static variable in class org.processmining.uncertaintymarker.help.DescriptionText

toString() - Method in class org.processmining.uncertaintymarker.models.Alignment

toString() - Method in class org.processmining.uncertaintymarker.models.Alternative

toString() - Method in class org.processmining.uncertaintymarker.models.Chunk

toString() - Method in class org.processmining.uncertaintymarker.models.Scoringtable

toString() - Method in class org.processmining.uncertaintymarker.parameters.Parameters

TraceAlignment - Class in org.processmining.uncertaintymarker.algorithms

The trace alignment step is the second out of four steps performed by this plugin.

TraceAlignment() - Constructor for class org.processmining.uncertaintymarker.algorithms.TraceAlignment

transferParameters(int[]) - Method in class org.processmining.uncertaintymarker.algorithms.TraceAlignment

In this constructor the scoring parameters are transfered from the user input to the objects datafields, in order to make the alignment configurable.

TransitionData - Class in org.processmining.uncertaintymarker.models

This class is used in AlignedStepDiscovery as well as in NetAttachment to aggregate confidence and frequency of events over all traces.

TransitionData() - Constructor for class org.processmining.uncertaintymarker.models.TransitionData

U

UncertaintyMarker - Class in org.processmining.uncertaintymarker.plugins

UncertaintyMarker() - Constructor for class org.processmining.uncertaintymarker.plugins.UncertaintyMarker

UserInput - Class in org.processmining.uncertaintymarker.dialogs

This class is a predefined component of the ProM Framework.

UserInput(UIPluginContext, XLog, Parameters) - Constructor for class org.processmining.uncertaintymarker.dialogs.UserInput

The JPanel that allows the user to set (a subset of) the parameters.

Utilities - Class in org.processmining.uncertaintymarker.help

This class contains utility functions which are used by different classes and do not belong to a specific one.

Utilities() - Constructor for class org.processmining.uncertaintymarker.help.Utilities

A C D E F G H I M N O P R S T U