org.processmining.plugins.tracealignmentwithguidetree.visualization

Class ConsensusComponent

java.lang.Object

java.awt.Component

java.awt.Container

javax.swing.JComponent

javax.swing.JPanel

org.processmining.plugins.tracealignmentwithguidetree.visualization.ConsensusComponent

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible, DisplayPropertiesListener, SequenceListener

public class ConsensusComponent
extends javax.swing.JPanel
implements SequenceListener, DisplayPropertiesListener

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields inherited from class javax.swing.JComponent

listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
ConsensusComponent(ConsensusSequence consensus, DisplayProperties displayProperties)

Method Summary

Modifier and Type	Method and Description
void	activityBackgroundChanged(DisplayProperties displayProperties)
void	displayAnnViewChanged(DisplayProperties displayProperties, Sequence sequence, boolean show)
void	displayFontChanged(DisplayProperties displayProperties)
void	displayGroupEditingChanged(DisplayProperties displayProperties)
void	displayHighlightsChanged(DisplayProperties displayProperties, Sequence sequence)
void	displayHighlightsChanged(DisplayProperties displayProperties, Sequence[] sequenceArray)
void	displayOverwriteChanged(DisplayProperties displayProperties)
void	displayRenderGapsChanged(DisplayProperties displayProperties)
void	displaySeqSelectChanged(DisplayProperties displayProperties, Sequence sequence, boolean select)
java.awt.Color	getConsensusColorAt(int i)
double	getConservationScoreAtColumnIndex(int i)
java.awt.Dimension	getPreferredSize()
java.lang.String	getToolTipText(java.awt.event.MouseEvent e)
void	paint(java.awt.Graphics g)
void	sequenceActivityChanged(Sequence sequence)
void	sequenceAnnotationChanged(Sequence sequence)
void	sequenceColorChanged(Sequence sequence)
void	sequenceColumnAnnotationsChanged(Sequence sequence, int column)
void	sequenceLineAnnotationsChanged(Sequence aaseq)
void	sequenceNameChanged(Sequence sequence, java.lang.String oldName)
void	sequenceNameColorChanged(java.awt.Color color)
void	setConsensus(ConsensusSequence consensus)

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ConsensusComponent

public ConsensusComponent(ConsensusSequence consensus,
                          DisplayProperties displayProperties)

Method Detail

setConsensus

public void setConsensus(ConsensusSequence consensus)

getPreferredSize

public java.awt.Dimension getPreferredSize()

Overrides:

getPreferredSize in class javax.swing.JComponent

getConsensusColorAt

public java.awt.Color getConsensusColorAt(int i)

getToolTipText

public java.lang.String getToolTipText(java.awt.event.MouseEvent e)

Overrides:

getToolTipText in class javax.swing.JComponent

getConservationScoreAtColumnIndex

public double getConservationScoreAtColumnIndex(int i)

paint

public void paint(java.awt.Graphics g)

Overrides:

paint in class javax.swing.JComponent

displayAnnViewChanged

public void displayAnnViewChanged(DisplayProperties displayProperties,
                                  Sequence sequence,
                                  boolean show)

Specified by:

displayAnnViewChanged in interface DisplayPropertiesListener

displaySeqSelectChanged

public void displaySeqSelectChanged(DisplayProperties displayProperties,
                                    Sequence sequence,
                                    boolean select)

Specified by:

displaySeqSelectChanged in interface DisplayPropertiesListener

displayFontChanged

public void displayFontChanged(DisplayProperties displayProperties)

Specified by:

displayFontChanged in interface DisplayPropertiesListener

displayRenderGapsChanged

public void displayRenderGapsChanged(DisplayProperties displayProperties)

Specified by:

displayRenderGapsChanged in interface DisplayPropertiesListener

displayGroupEditingChanged

public void displayGroupEditingChanged(DisplayProperties displayProperties)

Specified by:

displayGroupEditingChanged in interface DisplayPropertiesListener

displayOverwriteChanged

public void displayOverwriteChanged(DisplayProperties displayProperties)

Specified by:

displayOverwriteChanged in interface DisplayPropertiesListener

displayHighlightsChanged

public void displayHighlightsChanged(DisplayProperties displayProperties,
                                     Sequence sequence)

Specified by:

displayHighlightsChanged in interface DisplayPropertiesListener

displayHighlightsChanged

public void displayHighlightsChanged(DisplayProperties displayProperties,
                                     Sequence[] sequenceArray)

Specified by:

displayHighlightsChanged in interface DisplayPropertiesListener

activityBackgroundChanged

public void activityBackgroundChanged(DisplayProperties displayProperties)

Specified by:

activityBackgroundChanged in interface DisplayPropertiesListener

sequenceActivityChanged

public void sequenceActivityChanged(Sequence sequence)

Specified by:

sequenceActivityChanged in interface SequenceListener

sequenceNameColorChanged

public void sequenceNameColorChanged(java.awt.Color color)

Specified by:

sequenceNameColorChanged in interface SequenceListener

sequenceAnnotationChanged

public void sequenceAnnotationChanged(Sequence sequence)

Specified by:

sequenceAnnotationChanged in interface SequenceListener

sequenceColorChanged

public void sequenceColorChanged(Sequence sequence)

Specified by:

sequenceColorChanged in interface SequenceListener

sequenceColumnAnnotationsChanged

public void sequenceColumnAnnotationsChanged(Sequence sequence,
                                             int column)

sequenceLineAnnotationsChanged

public void sequenceLineAnnotationsChanged(Sequence aaseq)

Specified by:

sequenceLineAnnotationsChanged in interface SequenceListener

sequenceNameChanged

public void sequenceNameChanged(Sequence sequence,
                                java.lang.String oldName)
                         throws java.lang.Exception

Specified by:

sequenceNameChanged in interface SequenceListener

Throws:

java.lang.Exception