org.processmining.plugins.tracealignmentwithguidetree.ui

Class TraceAlignmentWithGuideTreeUI

java.lang.Object

org.processmining.plugins.tracealignmentwithguidetree.ui.TraceAlignmentWithGuideTreeUI

All Implemented Interfaces:

TraceAlignmentWithGuideTreeSettingsListener

public class TraceAlignmentWithGuideTreeUI
extends java.lang.Object
implements TraceAlignmentWithGuideTreeSettingsListener

Constructor Summary

Constructors

Constructor and Description
TraceAlignmentWithGuideTreeUI(org.processmining.contexts.uitopia.UIPluginContext context)

Method Summary

Modifier and Type	Method and Description
TraceAlignmentWithGuideTreeInput	getInput()
TraceAlignmentWithGuideTreeInput	readInput()
void	setAlignmentAlgorithm(AlignmentAlgorithm alignmentAlgorithm)
void	setIncrementLikeSubstitutionScoreValue(int incrementLikeSubstitutionScoreValue)
void	setIndelScoreFileName(java.lang.String indelScoreFileName)
void	setIndelScoreScaleValue(float indelScoreScaleValue)
void	setIsDeriveSubstitutionIndelScores(boolean isDeriveSubstitutionIndelScores)
void	setIsGapPenalty(boolean isGapPenalty)
void	setIsIncrementLikeSubstitutionScores(boolean isIncrementLikeSubstitutionScores)
void	setIsPerformRealignment(boolean isPerformRealignment)
void	setIsScaleIndelScores(boolean isScaleIndelScores)
void	setRealignmentStrategy(RealignmentStrategy realignmentStrategy)
void	setScoringMatrix(ScoringMatrix scoringMatrix)
void	setSubstitutionScoreFileName(java.lang.String substitutionScoreFileName)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TraceAlignmentWithGuideTreeUI

public TraceAlignmentWithGuideTreeUI(org.processmining.contexts.uitopia.UIPluginContext context)

Method Detail

readInput

public TraceAlignmentWithGuideTreeInput readInput()

setIsDeriveSubstitutionIndelScores

public void setIsDeriveSubstitutionIndelScores(boolean isDeriveSubstitutionIndelScores)

Specified by:

setIsDeriveSubstitutionIndelScores in interface TraceAlignmentWithGuideTreeSettingsListener

setSubstitutionScoreFileName

public void setSubstitutionScoreFileName(java.lang.String substitutionScoreFileName)

Specified by:

setSubstitutionScoreFileName in interface TraceAlignmentWithGuideTreeSettingsListener

setIndelScoreFileName

public void setIndelScoreFileName(java.lang.String indelScoreFileName)

Specified by:

setIndelScoreFileName in interface TraceAlignmentWithGuideTreeSettingsListener

setAlignmentAlgorithm

public void setAlignmentAlgorithm(AlignmentAlgorithm alignmentAlgorithm)

Specified by:

setAlignmentAlgorithm in interface TraceAlignmentWithGuideTreeSettingsListener

setScoringMatrix

public void setScoringMatrix(ScoringMatrix scoringMatrix)

Specified by:

setScoringMatrix in interface TraceAlignmentWithGuideTreeSettingsListener

setIsIncrementLikeSubstitutionScores

public void setIsIncrementLikeSubstitutionScores(boolean isIncrementLikeSubstitutionScores)

Specified by:

setIsIncrementLikeSubstitutionScores in interface TraceAlignmentWithGuideTreeSettingsListener

setIsGapPenalty

public void setIsGapPenalty(boolean isGapPenalty)

Specified by:

setIsGapPenalty in interface TraceAlignmentWithGuideTreeSettingsListener

getInput

public TraceAlignmentWithGuideTreeInput getInput()

setIncrementLikeSubstitutionScoreValue

public void setIncrementLikeSubstitutionScoreValue(int incrementLikeSubstitutionScoreValue)

Specified by:

setIncrementLikeSubstitutionScoreValue in interface TraceAlignmentWithGuideTreeSettingsListener

setIsScaleIndelScores

public void setIsScaleIndelScores(boolean isScaleIndelScores)

Specified by:

setIsScaleIndelScores in interface TraceAlignmentWithGuideTreeSettingsListener

setIndelScoreScaleValue

public void setIndelScoreScaleValue(float indelScoreScaleValue)

Specified by:

setIndelScoreScaleValue in interface TraceAlignmentWithGuideTreeSettingsListener

setIsPerformRealignment

public void setIsPerformRealignment(boolean isPerformRealignment)

Specified by:

setIsPerformRealignment in interface TraceAlignmentWithGuideTreeSettingsListener

setRealignmentStrategy

public void setRealignmentStrategy(RealignmentStrategy realignmentStrategy)

Specified by:

setRealignmentStrategy in interface TraceAlignmentWithGuideTreeSettingsListener