org.processmining.plugins.tracealignmentwithguidetree.datatypes

Class ConsensusSequence

java.lang.Object

org.processmining.plugins.tracealignmentwithguidetree.datatypes.Sequence

org.processmining.plugins.tracealignmentwithguidetree.datatypes.ConsensusSequence

public class ConsensusSequence
extends Sequence

Constructor Summary

Constructors

Modifier	Constructor and Description
	ConsensusSequence(AlignmentFrame owner, DisplayProperties displayProperties)
protected	ConsensusSequence(AlignmentFrame owner, DisplayProperties displayProperties, Sequence[] seqs)

Method Summary

Modifier and Type	Method and Description
double[]	getInformationInColumnGapsExcluded()
double[]	getInformationInColumnGapsIncluded()
double	log2(double x)
void	recalc()

Methods inherited from class org.processmining.plugins.tracealignmentwithguidetree.datatypes.Sequence

addListener, deleteActivity, getActivityIndex, getActivityIndexArray, getDuplicateTraceNameList, getEncodedActivity, getLengthWithGaps, getLengthWithoutGaps, getName, getNoDuplicates, getSequenceNameColor, getSequenceWithGaps, getSequenceWithoutGaps, getSequenceWithoutGapsString, getSortValue, initialize, removeListener, setActivity, setName, setSequenceNameColor, setSortValue, shiftActivity, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ConsensusSequence

public ConsensusSequence(AlignmentFrame owner,
                         DisplayProperties displayProperties)

ConsensusSequence

protected ConsensusSequence(AlignmentFrame owner,
                            DisplayProperties displayProperties,
                            Sequence[] seqs)

Method Detail

recalc

public void recalc()

log2

public double log2(double x)

getInformationInColumnGapsExcluded

public double[] getInformationInColumnGapsExcluded()

getInformationInColumnGapsIncluded

public double[] getInformationInColumnGapsIncluded()