public class SequenceAnnComponent extends javax.swing.JPanel implements SequenceListener, DisplayPropertiesListener, java.awt.event.MouseListener
javax.swing.JPanel.AccessibleJPaneljavax.swing.JComponent.AccessibleJComponentlistenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW| Constructor and Description |
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SequenceAnnComponent(AlignmentFrame owner,
Sequence sequence,
DisplayProperties displayProperties) |
getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUIaddAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, updateadd, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTreeaction, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCyclepublic SequenceAnnComponent(AlignmentFrame owner, Sequence sequence, DisplayProperties displayProperties)
public void setSequence(Sequence sequence)
public void edit(java.awt.Point loc)
public Sequence getSequence()
public void setCollapsed(boolean collapsed)
public boolean getCollapsed()
public java.awt.Dimension getPreferredSize()
getPreferredSize in class javax.swing.JComponentpublic java.awt.Dimension getSize()
getSize in class java.awt.Componentpublic void paint(java.awt.Graphics g)
paint in class javax.swing.JComponentpublic void sequenceAnnotationChanged(Sequence sequence)
sequenceAnnotationChanged in interface SequenceListenerpublic void sequenceActivityChanged(Sequence aaseq)
sequenceActivityChanged in interface SequenceListenerpublic void sequenceColorChanged(Sequence sequence)
sequenceColorChanged in interface SequenceListenerpublic void sequenceColumnAnnotationsChanged(Sequence sequence, int column)
sequenceColumnAnnotationsChanged in interface SequenceListenerpublic void sequenceLineAnnotationsChanged(Sequence aaseq)
sequenceLineAnnotationsChanged in interface SequenceListenerpublic void sequenceNameChanged(Sequence sequence, java.lang.String oldName) throws java.lang.Exception
sequenceNameChanged in interface SequenceListenerjava.lang.Exceptionpublic void displayAnnViewChanged(DisplayProperties dp, Sequence sequence, boolean show)
displayAnnViewChanged in interface DisplayPropertiesListenerpublic void displayColorSchemeChanged(DisplayProperties dp, ColorScheme old)
displayColorSchemeChanged in interface DisplayPropertiesListenerpublic void displayFontChanged(DisplayProperties dp)
displayFontChanged in interface DisplayPropertiesListenerpublic void displayGroupEditingChanged(DisplayProperties dp)
displayGroupEditingChanged in interface DisplayPropertiesListenerpublic void displayHighlightsChanged(DisplayProperties dp, Sequence sequence)
displayHighlightsChanged in interface DisplayPropertiesListenerpublic void displayHighlightsChanged(DisplayProperties dp, Sequence[] sequenceArray)
displayHighlightsChanged in interface DisplayPropertiesListenerpublic void displayOverwriteChanged(DisplayProperties dp)
displayOverwriteChanged in interface DisplayPropertiesListenerpublic void displayRenderGapsChanged(DisplayProperties dp)
displayRenderGapsChanged in interface DisplayPropertiesListenerpublic void activityBackgroundChanged(DisplayProperties dp)
activityBackgroundChanged in interface DisplayPropertiesListenerpublic void displaySeqSelectChanged(DisplayProperties dp, Sequence sequence, boolean select)
displaySeqSelectChanged in interface DisplayPropertiesListenerpublic void mouseClicked(java.awt.event.MouseEvent arg0)
mouseClicked in interface java.awt.event.MouseListenerpublic void mouseEntered(java.awt.event.MouseEvent arg0)
mouseEntered in interface java.awt.event.MouseListenerpublic void mouseExited(java.awt.event.MouseEvent arg0)
mouseExited in interface java.awt.event.MouseListenerpublic void mousePressed(java.awt.event.MouseEvent arg0)
mousePressed in interface java.awt.event.MouseListenerpublic void mouseReleased(java.awt.event.MouseEvent arg0)
mouseReleased in interface java.awt.event.MouseListener