public class ColumnAnnotationComponent extends javax.swing.JPanel implements AlignmentListener, SequenceListener, DisplayPropertiesListener
javax.swing.JPanel.AccessibleJPaneljavax.swing.JComponent.AccessibleJComponentlistenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW| Constructor and Description |
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ColumnAnnotationComponent(Alignment alignment,
DisplayProperties displayProperties) |
getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUIaddAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, updateadd, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTreeaction, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCyclepublic ColumnAnnotationComponent(Alignment alignment, DisplayProperties displayProperties)
public java.awt.Dimension getPreferredSize()
getPreferredSize in class javax.swing.JComponentpublic void paintComponent(java.awt.Graphics g)
paintComponent in class javax.swing.JComponentpublic void alignmentSeqDeleted(Alignment alignment, int i, Sequence sequence)
alignmentSeqDeleted in interface AlignmentListenerpublic void alignmentSeqInserted(Alignment alignment, int i)
alignmentSeqInserted in interface AlignmentListenerpublic void alignmentNameChanged(Alignment alignment)
alignmentNameChanged in interface AlignmentListenerpublic void alignmentSeqActivityChanged(Alignment alignment, Sequence sequence)
alignmentSeqActivityChanged in interface AlignmentListenerpublic void alignmentSeqSwapped(Alignment alignment, int i, int j)
alignmentSeqSwapped in interface AlignmentListenerpublic void sequenceActivityChanged(Sequence aaseq)
sequenceActivityChanged in interface SequenceListenerpublic void sequenceColumnAnnotationsChanged(Sequence sequence, int column)
sequenceColumnAnnotationsChanged in interface SequenceListenerpublic void sequenceAnnotationChanged(Sequence sequence)
sequenceAnnotationChanged in interface SequenceListenerpublic void sequenceColorChanged(Sequence sequence)
sequenceColorChanged in interface SequenceListenerpublic void sequenceLineAnnotationsChanged(Sequence aaseq)
sequenceLineAnnotationsChanged in interface SequenceListenerpublic void sequenceNameChanged(Sequence sequence, java.lang.String oldName) throws java.lang.Exception
sequenceNameChanged in interface SequenceListenerjava.lang.Exceptionpublic void displayFontChanged(DisplayProperties dp)
displayFontChanged in interface DisplayPropertiesListenerpublic void displayAnnViewChanged(DisplayProperties dp, Sequence sequence, boolean show)
displayAnnViewChanged in interface DisplayPropertiesListenerpublic void displayColorSchemeChanged(DisplayProperties dp, ColorScheme old)
displayColorSchemeChanged in interface DisplayPropertiesListenerpublic void displayGroupEditingChanged(DisplayProperties dp)
displayGroupEditingChanged in interface DisplayPropertiesListenerpublic void displayHighlightsChanged(DisplayProperties dp, Sequence sequence)
displayHighlightsChanged in interface DisplayPropertiesListenerpublic void displayHighlightsChanged(DisplayProperties dp, Sequence[] sequenceArray)
displayHighlightsChanged in interface DisplayPropertiesListenerpublic void displayOverwriteChanged(DisplayProperties dp)
displayOverwriteChanged in interface DisplayPropertiesListenerpublic void displayRenderGapsChanged(DisplayProperties dp)
displayRenderGapsChanged in interface DisplayPropertiesListenerpublic void activityBackgroundChanged(DisplayProperties dp)
activityBackgroundChanged in interface DisplayPropertiesListenerpublic void displaySeqSelectChanged(DisplayProperties dp, Sequence sequence, boolean select)
displaySeqSelectChanged in interface DisplayPropertiesListener