org.processmining.plugins.tracealignment.msa

Class MSA

java.lang.Object

org.processmining.plugins.tracealignment.msa.MSA

public class MSA
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
MSA(int encodingLength, java.util.List<java.lang.String> charStreamList, int[][] itemsJoined, java.util.Map<java.lang.String,java.lang.Integer> substitutionScoreMap, java.util.Map<java.lang.String,java.lang.Integer> indelRightGivenLeftScoreMap, int incrementLikeSubstitutionScore, float scaleFactor, int gapPenalty, float lengthRatioThreshold)

Method Summary

Modifier and Type	Method and Description
java.util.List<java.lang.String[]>	getAlignments(int noClusters)
java.util.Set<java.lang.Integer>	getClusterItems(int noClusters)
java.util.Set<java.lang.Integer>	getItemElements(int index, int noClusters)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MSA

public MSA(int encodingLength,
           java.util.List<java.lang.String> charStreamList,
           int[][] itemsJoined,
           java.util.Map<java.lang.String,java.lang.Integer> substitutionScoreMap,
           java.util.Map<java.lang.String,java.lang.Integer> indelRightGivenLeftScoreMap,
           int incrementLikeSubstitutionScore,
           float scaleFactor,
           int gapPenalty,
           float lengthRatioThreshold)

Method Detail

getAlignments

public java.util.List<java.lang.String[]> getAlignments(int noClusters)

getClusterItems

public java.util.Set<java.lang.Integer> getClusterItems(int noClusters)

getItemElements

public java.util.Set<java.lang.Integer> getItemElements(int index,
                                                        int noClusters)