A C E F G H I M O P S T

A

apply(MCLMatrix, MarkovClusteringParameters) - Method in class org.processmining.markovclustering.algorithms.clustering.impl.MCLAlgorithm_JAMA_Par

apply(MCLMatrix, MarkovClusteringParameters) - Method in class org.processmining.markovclustering.algorithms.clustering.impl.MCLAlgorithm_MTJ_Netlib

apply(MCLMatrix, MarkovClusteringParameters) - Method in interface org.processmining.markovclustering.algorithms.clustering.MarkovClusteringAlgorithm

C

cluster(List<E>, MarkovClusteringAlgorithm, MarkovClusteringParameters) - Method in class org.processmining.markovclustering.algorithms.clustering.Clusterer

Clusterer<E> - Class in org.processmining.markovclustering.algorithms.clustering

Abstract class that defines a toMCLMatrix-method to convert a List of Object of some generic type E into a matrix.

Clusterer() - Constructor for class org.processmining.markovclustering.algorithms.clustering.Clusterer

columnNormalize(MCLMatrix) - Static method in class org.processmining.markovclustering.utils.MatrixUtils

Column-normalizes a Matrix to 1.

copy() - Method in class org.processmining.markovclustering.models.MCLMatrix

Creates a (deep) copy of this Matrix.

E

equals(Object) - Method in class org.processmining.markovclustering.parameters.impl.MarkovClusteringParameters

expand(MCLMatrix, int) - Method in class org.processmining.markovclustering.algorithms.clustering.impl.MCLAlgorithm_MTJ_Netlib

Expands this Matrix to a given expansionParameter using exponentiation by squaring.

expandNaive(MCLMatrix, int) - Method in class org.processmining.markovclustering.algorithms.clustering.impl.MCLAlgorithm_MTJ_Netlib

F

FormatMillisToDate(long) - Static method in class org.processmining.markovclustering.utils.StringUtils

G

getExpansionParameter() - Method in class org.processmining.markovclustering.parameters.impl.MarkovClusteringParameters

getInflationParameter() - Method in class org.processmining.markovclustering.parameters.impl.MarkovClusteringParameters

getMaxIterationsParameter() - Method in class org.processmining.markovclustering.parameters.impl.MarkovClusteringParameters

getPruneValue() - Method in class org.processmining.markovclustering.parameters.impl.MarkovClusteringParameters

getStopCriterion() - Method in class org.processmining.markovclustering.parameters.impl.MarkovClusteringParameters

getTotalAbsoluteChange(MCLMatrix, MCLMatrix) - Static method in class org.processmining.markovclustering.utils.MatrixUtils

Get the total absolute change in values between two Matrices A and B.

getTotalPercentageChange(MCLMatrix, MCLMatrix) - Static method in class org.processmining.markovclustering.utils.MatrixUtils

Get the total percentage change in values between two Matrices A and B.

H

hashCode() - Method in class org.processmining.markovclustering.parameters.impl.MarkovClusteringParameters

I

identity(int) - Static method in class org.processmining.markovclustering.models.MCLMatrix

Creates an identity matrix (diagonal places are 1, rest is 0) of the given dimensionality.

inflate(MCLMatrix, double) - Method in class org.processmining.markovclustering.algorithms.clustering.impl.MCLAlgorithm_MTJ_Netlib

Inflates this Matrix to a given inflationParameter.

isVerbose() - Method in class org.processmining.markovclustering.parameters.impl.MarkovClusteringParameters

M

MarkovClusteringAlgorithm - Interface in org.processmining.markovclustering.algorithms.clustering

MarkovClusteringParameters - Class in org.processmining.markovclustering.parameters.impl

Parameters object for the Markov cluster algorithm.

MarkovClusteringParameters() - Constructor for class org.processmining.markovclustering.parameters.impl.MarkovClusteringParameters

MarkovClusteringParameters(MarkovClusteringParameters) - Constructor for class org.processmining.markovclustering.parameters.impl.MarkovClusteringParameters

MatrixUtils - Class in org.processmining.markovclustering.utils

MatrixUtils() - Constructor for class org.processmining.markovclustering.utils.MatrixUtils

MCLAlgorithm_JAMA_Par - Class in org.processmining.markovclustering.algorithms.clustering.impl

Markov cluster algorithm implementation using Jama library for matrices and multithreading.

MCLAlgorithm_JAMA_Par() - Constructor for class org.processmining.markovclustering.algorithms.clustering.impl.MCLAlgorithm_JAMA_Par

MCLAlgorithm_MTJ_Netlib - Class in org.processmining.markovclustering.algorithms.clustering.impl

Markov cluster algorithm implementation using the MTJ library.

MCLAlgorithm_MTJ_Netlib() - Constructor for class org.processmining.markovclustering.algorithms.clustering.impl.MCLAlgorithm_MTJ_Netlib

MCLMatrix - Class in org.processmining.markovclustering.models

Square matrix that holds similarity values.

MCLMatrix(int) - Constructor for class org.processmining.markovclustering.models.MCLMatrix

Creates a square matrix with the given amount of rows and columns.

MCLMatrix(Matrix) - Constructor for class org.processmining.markovclustering.models.MCLMatrix

Creates a deep copy of the given Matrix.

MCLMatrix(Matrix, boolean) - Constructor for class org.processmining.markovclustering.models.MCLMatrix

Creates either a deep or shallow copy of the given Matrix.

MCLMatrix(double[][]) - Constructor for class org.processmining.markovclustering.models.MCLMatrix

Create a matrix that matches the values double array

O

org.processmining.markovclustering.algorithms.clustering - package org.processmining.markovclustering.algorithms.clustering

org.processmining.markovclustering.algorithms.clustering.impl - package org.processmining.markovclustering.algorithms.clustering.impl

org.processmining.markovclustering.models - package org.processmining.markovclustering.models

org.processmining.markovclustering.parameters.impl - package org.processmining.markovclustering.parameters.impl

org.processmining.markovclustering.utils - package org.processmining.markovclustering.utils

P

ProvidedMatrixClusterer<E> - Class in org.processmining.markovclustering.algorithms.clustering.impl

ProvidedMatrixClusterer(MCLMatrix) - Constructor for class org.processmining.markovclustering.algorithms.clustering.impl.ProvidedMatrixClusterer

prune(MCLMatrix, double) - Static method in class org.processmining.markovclustering.utils.MatrixUtils

Prunes a matrix by setting the values of the matrix to 0 if they're lower than the minimal value threshold.

S

setExpansionParameter(int) - Method in class org.processmining.markovclustering.parameters.impl.MarkovClusteringParameters

setInflationParameter(double) - Method in class org.processmining.markovclustering.parameters.impl.MarkovClusteringParameters

setMaxIterationsParameter(int) - Method in class org.processmining.markovclustering.parameters.impl.MarkovClusteringParameters

setPruneValue(double) - Method in class org.processmining.markovclustering.parameters.impl.MarkovClusteringParameters

setStopCriterion(double) - Method in class org.processmining.markovclustering.parameters.impl.MarkovClusteringParameters

setVerbose(boolean) - Method in class org.processmining.markovclustering.parameters.impl.MarkovClusteringParameters

StringUtils - Class in org.processmining.markovclustering.utils

StringUtils() - Constructor for class org.processmining.markovclustering.utils.StringUtils

T

toMCLMatrix(List<E>) - Method in class org.processmining.markovclustering.algorithms.clustering.Clusterer

toMCLMatrix(List<E>) - Method in class org.processmining.markovclustering.algorithms.clustering.impl.ProvidedMatrixClusterer

A C E F G H I M O P S T