org.processmining.prabhakardixit.alignments.visualization

Class TreeViz.BIFToGraphML

java.lang.Object

org.processmining.prabhakardixit.alignments.visualization.TreeViz.BIFToGraphML

Enclosing class:

TreeViz

public static class TreeViz.BIFToGraphML
extends java.lang.Object

Turns the XML BIF format into GraphML XML format.

Version:

$Revision$

Author:

fracpete (fracpete at waikato dot ac dot nz)

Constructor Summary

Constructors

Constructor and Description
BIFToGraphML()

Method Summary

Modifier and Type	Method and Description
java.lang.String	convert(java.lang.String input) Parses the incoming data and writes the generated output.
protected java.lang.String	sanitize(java.lang.String s) Replaces certain characters with their character entities.
protected void	writeEdges(java.io.BufferedWriter writer, weka.core.FastVector nodes, weka.gui.graphvisualizer.GraphEdge edge) Writes the edge as GraphML.
protected void	writeFooter(java.io.BufferedWriter writer) Writes the footer of the GraphML file.
protected void	writeHeader(java.io.BufferedWriter writer) Writes the header of the GraphML file.
protected void	writeNodes(java.io.BufferedWriter writer, weka.gui.graphvisualizer.GraphNode node) Writes the node as GraphML.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BIFToGraphML

public BIFToGraphML()

Method Detail

sanitize

protected java.lang.String sanitize(java.lang.String s)

Replaces certain characters with their character entities.

Parameters:

s - the string to process

Returns:

the processed string

writeHeader

protected void writeHeader(java.io.BufferedWriter writer)
                    throws java.lang.Exception

Writes the header of the GraphML file.

Parameters:

writer - the writer to use

Throws:

java.lang.Exception - if an error occurs

writeNodes

protected void writeNodes(java.io.BufferedWriter writer,
                          weka.gui.graphvisualizer.GraphNode node)
                   throws java.lang.Exception

Writes the node as GraphML.

Parameters:

writer - the writer to use

node - the node to write as GraphML

Throws:

java.lang.Exception - if an error occurs

writeEdges

protected void writeEdges(java.io.BufferedWriter writer,
                          weka.core.FastVector nodes,
                          weka.gui.graphvisualizer.GraphEdge edge)
                   throws java.lang.Exception

Writes the edge as GraphML.

Parameters:

writer - the writer to use

nodes - the nodes

edge - the edge to writge

Throws:

java.lang.Exception - if an error occurs

writeFooter

protected void writeFooter(java.io.BufferedWriter writer)
                    throws java.lang.Exception

Writes the footer of the GraphML file.

Parameters:

writer - the writer to use

Throws:

java.lang.Exception - if an error occurs

convert

public java.lang.String convert(java.lang.String input)
                         throws java.lang.Exception

Parses the incoming data and writes the generated output.

Parameters:

input - the string read the BIF data from

Returns:

the generated GraphML

Throws:

java.lang.Exception - if parsing or writing fails