Class EMSCParametersAbstract<A extends Order,​B extends Order>

    • Constructor Detail

      • EMSCParametersAbstract

        public EMSCParametersAbstract​(boolean debug,
                                      boolean computeStochasticTraceAlignments)
    • Method Detail

      • setDistanceMatrix

        public void setDistanceMatrix​(DistanceMatrix<A,​B> distanceMatrix)
      • setDebug

        public void setDebug​(boolean debug)
      • setComputeStochasticTraceAlignments

        public void setComputeStochasticTraceAlignments​(boolean computeStochasticTraceAlignments)
        If the stochastic trace alignments are not necessary (i.e. only the numeric result is required), set this to false to save a bit of time.
        Parameters:
        computeStochasticTraceAlignments -